Rename _build_index to build_byte_index

levitsky / pyteomics

Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.

http://pyteomics.readthedocs.io

Apache License 2.0

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Rename _build_index to build_byte_index #142

Closed levitsky closed 4 months ago

levitsky commented 5 months ago

Fixes #140.

unified method name is now build_byte_index across all indexed and index-saving parsers;
the method returns the index rather than assign it (the behavior of build_byte_index is preserved);
warning is thrown when defining an IndexedXML subclass with a _build_index method (Python 3 only).

@mobiusklein could you please take a look at it?