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levitsky / pyteomics

Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
http://pyteomics.readthedocs.io
Apache License 2.0
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Is there an idXML writer anywhere? what about a schema? #73

Closed trishorts closed 2 years ago

trishorts commented 2 years ago

I'd like to be able to generate an idXML from our own software but looking for an examples so that i can get it right. Is there test code to see if the files I generated are readable? other than using your reader and seeing if it crashes?

levitsky commented 2 years ago

Unfortunately I don't know much about this; I'd look at pyOpenMS to see if it provides a writing interface. There are also some schemas there: https://github.com/OpenMS/OpenMS/tree/develop/share/OpenMS/SCHEMAS

Unfortunately, with Pyteomics I didn't go any further than providing a reader.

trishorts commented 2 years ago

thank you!