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leylabmpi
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resmico
Identifying misassemblies via deep learning
MIT License
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contig_frac parameter in YAML config file for ResMiCo-SM
#35
mudamaid62
closed
6 months ago
1
bam2feat error: Return code -11
#34
AroneyS
closed
5 months ago
6
How to train ResMiCo on my own dataset?
#33
Dylan1021
closed
9 months ago
4
Training / testing dataset
#32
Dylan1021
closed
1 year ago
5
Could not create cudnn handle: CUDNN_STATUS_NOT_INITIALIZED
#31
atyakhtmpg
opened
1 year ago
1
Resmico tests fail and more
#30
ponomarevsy
opened
1 year ago
2
ValueError: max() arg is an empty sequence in reader.pyx - over a small assembly
#29
atyakhtmpg
opened
1 year ago
0
Error with resmico evaluate: OSError: [Errno 9] Bad file descriptor
#28
Yunliang81
opened
1 year ago
5
AttributeError: module 'numpy' has no attribute 'bool'. resmico evaluate
#27
Yunliang81
closed
1 year ago
2
Could not load dynamic library "libcudnn.so.8"
#26
Yunliang81
closed
1 year ago
4
resmico bam2feat Error (ValueError: Return code: -11)
#25
Yunliang81
closed
1 year ago
0
Samtools index on bam in resmico-bam2feat_TMP
#24
roachjm-unc
closed
1 year ago
3
Fix crash when processing unmapped reads in bam2feat
#23
danieldanciu
closed
2 years ago
1
segfault in bam2feat ?
#22
roachjm-unc
closed
2 years ago
5
Missing samtools/Incompatible OpenSSL
#21
ohickl
opened
2 years ago
5
added .gitpod setup
#20
nick-youngblut
closed
2 years ago
0
ResMiCo on scaffolds?
#19
GeoMicroSoares
opened
2 years ago
1
Support new network: 'cnn_resnet_argmax'
#18
danieldanciu
closed
2 years ago
0
Add support for masking in avg/max pooling. Add coverage stats and avg coverage for each contig.
#17
danieldanciu
closed
2 years ago
0
Mask average pooling layer
#16
danieldanciu
closed
2 years ago
0
Support evaluation based on binary data
#15
danieldanciu
closed
2 years ago
0
Translation invariance
#14
danieldanciu
closed
3 years ago
0
Make sure that breakpoint is in the random sub-contig for long contigs
#13
danieldanciu
closed
3 years ago
0
Invariance to base swap; ResMiCo->resmico
#12
danieldanciu
closed
3 years ago
0
Tweaks to training script. Correctly compute feature sizes in GPU memory.
#11
danieldanciu
closed
3 years ago
0
Cache eval data transposed, but unpadded (~5x less memory). Shuffle cached data. Load eval data based on available GPU memory
#10
danieldanciu
closed
3 years ago
0
Parallel Cython reading of data. Cache data in memory when using --cache
#9
danieldanciu
closed
3 years ago
0
Cache all data in memory
#8
danieldanciu
closed
3 years ago
0
Optimizations for batch generation
#7
danieldanciu
closed
3 years ago
0
Fix github workflow for Conda-based tests
#6
danieldanciu
closed
3 years ago
0
Use tf.data instead of Keras' Sequences and other optimizations in training
#5
danieldanciu
closed
3 years ago
0
Add variation to the interval around the breaking point
#4
danieldanciu
closed
3 years ago
0
Binary data in Python + Use jsonh to create json stats
#3
danieldanciu
closed
3 years ago
0
Group by contig rather than by column. Support for breaking points.
#2
danieldanciu
closed
3 years ago
0
Add support for compressed columns and merge misassembly information
#1
danieldanciu
closed
3 years ago
0