Closed plbaldoni closed 3 years ago
Hi Pedro - thank you for the report.
It looks like the documentation is wrong. The code for calculateFragments,character,Spectrum2
calls calculateFragments_Spectrum2
:
calculateFragments_Spectrum2 <- function(sequence, object, tolerance=0.1,
method=c("highest", "closest", "all"),
relative=FALSE, ...)
which indicates that the defaults are 0.1
and FALSE
.
I will check with @sgibb to see if there's anything I'm missing, otherwise this will need to be fixed.
Hi there,
What are the default values for
tolerance
andrelative
incalculateFragments
?My understanding from the man docs is that
tolerance = 25e-6
andrelative = TRUE
. But it does not seem to be the case.Thanks, Pedro