Hi, I keep getting an error when loading the package. I tried installing "scales" but it's not working. Any help is much appreciated!
Loading required package: MSnbase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, basename, cbind, colMeans,
colnames, colSums, dirname, do.call, duplicated, eval, evalq,
Filter, Find, get, grep, grepl, intersect, is.unsorted, lapply,
lengths, Map, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, Position, rank, rbind, Reduce, rowMeans, rownames,
rowSums, sapply, setdiff, sort, table, tapply, union, unique,
unsplit, which, which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: mzR
Loading required package: Rcpp
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Loading required package: ProtGenerics
Error: package or namespace load failed for ‘MSnbase’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called ‘scales’
Error in .requirePackage(package) :
unable to find required package ‘MSnbase’
In addition: Warning messages:
1: In normalizePath(path.expand(path), winslash, mustWork) :
path[1]="NA": The system cannot find the file specified
2: In fun(libname, pkgname) :
mzR has been built against a different Rcpp version (1.0.0)
than is installed on your system (1.0.6). This might lead to errors
when loading mzR. If you encounter such issues, please send a report,
including the output of sessionInfo() to the Bioc support forum at
https://support.bioconductor.org/. For details see also
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
Loading required package: MSnbase
Error: package or namespace load failed for ‘MSnbase’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called ‘scales’
Error in .requirePackage(package) :
unable to find required package ‘MSnbase’
installed.packages("scales")
Package LibPath Version Priority Depends Imports LinkingTo Suggests Enhances License
License_is_FOSS License_restricts_use OS_type Archs MD5sum NeedsCompilation Built
> install.packages("scales")
Installing package into ‘C:/Users/___/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
There is a binary version available but the source version is later:
binary source needs_compilation
scales 1.1.0 1.1.1 FALSE
installing the source package ‘scales’
trying URL 'https://cran.rstudio.com/src/contrib/scales_1.1.1.tar.gz'
Content type 'application/x-gzip' length 515201 bytes (503 KB)
downloaded 503 KB
* installing *source* package 'scales' ...
** package 'scales' successfully unpacked and MD5 sums checked
** R
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'colorspace'
ERROR: lazy loading failed for package 'scales'
* removing 'C:/Users/__/Documents/R/win-library/3.5/scales'
In R CMD INSTALL
Warning in install.packages :
installation of package ‘scales’ had non-zero exit status
The downloaded source packages are in
‘C:\Users\___
> sessionInfo()
R version 3.5.3 (2019-03-11)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19042)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] ProtGenerics_1.14.0 S4Vectors_0.20.1 mzR_2.16.2 Rcpp_1.0.6
[5] Biobase_2.42.0 BiocGenerics_0.28.0
loaded via a namespace (and not attached):
[1] codetools_0.2-18 grid_3.5.3 ncdf4_1.17 impute_1.56.0
[5] BiocParallel_1.16.6 tools_3.5.3 tinytex_0.30 xfun_0.21
[9] compiler_3.5.3
Hi, I keep getting an error when loading the package. I tried installing "scales" but it's not working. Any help is much appreciated!