Adding packages and examples

[lgatto]

Packages to add to the RforProteomics vignette:

From Bioc:

• [x] msmsEDA and msmsTests
• [ ] MSstats

From CRAN:

• [ ] isopat: Calculation of isotopic pattern for a given molecular formula
• [ ] protiq: Protein (identification and) quantification based on peptide evidence - also contains SCAMPI
• [ ] aLFQ An R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data - ref
• [ ] protViz: Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

Other:

• EBprot Bayesian Analysis of labeling-based Quantitative Proteomics Data - ref

Possibly get in touch with authors, and ask them to contribute a short section to the vignette?