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lgatto / pRoloc

A unifying bioinformatics framework for organelle proteomics
http://lgatto.github.io/pRoloc/
15 stars 13 forks source link

Travis deployment #119

Closed lgatto closed 5 years ago

lgatto commented 5 years ago

Struggling with the travis deployment

── Building articles ───────────────────────────────────────────────────────────
Writing 'articles/index.html'
Reading 'vignettes/v01-pRoloc-tutorial.Rmd'
<simpleError in packageVersion(pkg): package ‘pRoloc’ not found>
Error in packageVersion(pkg) : package ‘pRoloc’ not found
Calls: <Anonymous> -> build_site_external -> <Anonymous> -> get_result
Execution halted
/home/travis/.travis/job_stages: line 415: 14479 Terminated              travis_jigger "${!}" "${timeout}" "${cmd[@]}"

See https://travis-ci.org/lgatto/pRoloc/jobs/448770297#L1431

@sgibb - do you have an idea?

sgibb commented 5 years ago

That's wired. I can't reproduce the error on my computer. Unfortunately I don't know why pkgdown::build_site() fails, here. I tried to use pkgdown and pkgload from github but this dosn't solve the problem: https://travis-ci.org/sgibb/pRoloc/builds/449280295

This error seems stupid because pRoloc was successfully loaded a few lines before.

lgatto commented 5 years ago

This error seems stupid because pRoloc was successfully loaded a few lines before.

Exactly!

Neither can I locally. Oh dear...

lgatto commented 5 years ago

Or could it be related to Bioc being in the middle of a release? If so, the current build should work. Crossing my fingers.

sgibb commented 5 years ago

JFTR I have the same error for cleaver: https://travis-ci.org/sgibb/cleaver/jobs/450230056#L1412 (it doesn't fail but produce a 404 instead of a vignette).