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lgatto / pRoloc

A unifying bioinformatics framework for organelle proteomics
http://lgatto.github.io/pRoloc/
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Use different pre-processing for phenoDisco #99

Closed lgatto closed 7 years ago

lgatto commented 7 years ago

Try plugging in t-sne rather than PCA.

lgatto commented 7 years ago

@kbarylyuk there is now a t-SNE-based phenoDisco novelty detection version on the github version of pRoloc. You can install it with 

devtools::install_github("lgatto/pRoloc")

See ?phenoDisco for details.

If you try it out, please so let me know what you think. All advice that is given for PCA also applies when using t-SNE to pre-process the data.