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lgatto / rpx

R Interface to the ProteomeXchange Repository
http://lgatto.github.io/rpx/
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Error in file(file, "rt") ... #18

Closed HijaziHassan closed 2 years ago

HijaziHassan commented 2 years ago

Hi Igatto,

Whenever I try to run this code px1 <- PXDataset("PXD000001")

It tries to fetch the data ..

Querying ProteomeXchange for PXD000001.

but .. it finally throws an error ...

Error in file(file, "rt") : cannot open the connection
In addition: Warning messages:
1: In file(file, "rt") :
  the 'wininet' method of url() is deprecated for ftp:// URLs
2: In file(file, "rt") :
  InternetOpenUrl failed: 'A connection with the server could not be established
'

Is still a problem of the database? Thanks

lgatto commented 2 years ago

Yes, that's because PRIDE is broken (see #17 and here on twitter).

HijaziHassan commented 2 years ago

Ok, thank you very much.