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lgatto / synapter

Label-free data analysis pipeline for optimal identification and quantitation
https://lgatto.github.io/synapter/
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problem with making master #100

Closed pavel-shliaha closed 9 years ago

pavel-shliaha commented 9 years ago

there is a problem of making master with these files (put them in /data/export/RAW/pvs22/_QTOF_DATA_data3/data_for_synapter_2.0/bug/2015_10_08_master error)

Processing 29022012_Ecoli_spikes_200fmol_04_IA_final_peptide.csv
Processing 29022012_Ecoli_spikes_500fmol_04_IA_final_peptide.csv
Processing 29022012_Ecoli_spikes_500fmol_06_IA_final_peptide.csv
Master: 29022012_Ecoli_spikes_500fmol_04_IA_final_peptide.csv (5554 peptides)
 |--- (1) Merged: 5554 features.
 +- Merging master and 29022012_Ecoli_spikes_500fmol_06_IA_final_peptide.csv (5498 peptides)
 |--- (2) Merged: 6526 features.
 +- Merging master and 29022012_Ecoli_spikes_200fmol_04_IA_final_peptide.csv (4568 peptides)
 \--- (3) Merged: 7024 features.
Master: 29022012_Ecoli_spikes_500fmol_06_IA_final_peptide.csv (5498 peptides)
 |--- (1) Merged: 5498 features.
 +- Merging master and 29022012_Ecoli_spikes_200fmol_04_IA_final_peptide.csv (4568 peptides)
 |--- (2) Merged: 6336 features.
 +- Merging master and 29022012_Ecoli_spikes_500fmol_04_IA_final_peptide.csv (5554 peptides)
 \--- (3) Merged: 7043 features.
Regenerate precursor.leIDs.
Creating fragment library.
Reading E:\new_saturation_dataset_for_sebastian\FF\29022012_Ecoli_spikes_200fmol_04_IA_final_fragment.csv
|================================================================================| 100%   69 MB
Reading E:\new_saturation_dataset_for_sebastian\FF\29022012_Ecoli_spikes_500fmol_04_IA_final_fragment.csv
|================================================================================| 100%   88 MB
Reading E:\new_saturation_dataset_for_sebastian\FF\29022012_Ecoli_spikes_500fmol_06_IA_final_fragment.csv
Recalculate fragments' intensity values.
Error in split.default(x, g) : first argument must be a vector