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lgatto / synapter

Label-free data analysis pipeline for optimal identification and quantitation
https://lgatto.github.io/synapter/
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synergize2 needed? #119

Closed sgibb closed 7 years ago

sgibb commented 7 years ago

In synapter 1 we had a synergize function to run the typical workflow and generating a report. Should we provide a similar method synergize2 for the new synapter including 3d grid search, fragment matching etc.?

Or should we remove even the old synergize and let the user build his own workflow?

lgatto commented 7 years ago

Yes, I would suggest a synapter2 function is the way forward because

  1. It is easier to start from scratch rather then modifying an existing function.
  2. We keep implicit backward compatibility.