Closed xiucz closed 2 years ago
Hi, In my pipline, I use AnnotSV to annotate a blank vcf (there is no varaint record in vcf, only the ## headers ), leading to an error:
##
SVinputFile (svaba.sv.vcf is empty, no SV to annotate -Exit without error.
How about AnnotSV returns a blank tsv file with headers when this situation occurs without pipeline breaking down?
Hi xiucz,
AnnotSV doesn't return a blank tsv file with headers. But AnnotSV returns "exit 0 status" which should not break bioinformatics pipelines.
Best, Véronique
Hi, In my pipline, I use AnnotSV to annotate a blank vcf (there is no varaint record in vcf, only the
##
headers ), leading to an error:How about AnnotSV returns a blank tsv file with headers when this situation occurs without pipeline breaking down?