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lgmgeo / AnnotSV

Annotation and Ranking of Structural Variation
GNU General Public License v3.0
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No releases available - Exomiser update #25

Open pneerincx opened 4 years ago

pneerincx commented 4 years ago

There is a recent commit with commit message "New official release: 2.4", but there are no releases: https://github.com/lgmgeo/AnnotSV/releases Could you please hit the "Draft a new release" button to create a properly tagged release?

lgmgeo commented 4 years ago

Hi, You're right. Thank you for pointing out the omission. I will tag the next release. Best, Véronique

lgmgeo commented 3 years ago

Done

pneerincx commented 3 years ago

Thanks!

Stikus commented 2 years ago

@lgmgeo Hello, recently I've checked for new releases of AnnotSV and understood that there are 3.1 and 3.1.1. I'm watching for releases in repository, but tags are not releases (only needed part for them). So I don't get any notification from github.

Can you create releases too if you have time?

Btw - I've found 13.0.0 files here: https://exomiser.monarchinitiative.org/exomiser/download - maybe your https://github.com/lgmgeo/AnnotSV/blob/master/share/AnnotSV/jar/exomiser-rest-prioritiser-12.1.0.jar needs update too?

lgmgeo commented 2 years ago 
Can you create releases too if you have time?

Of course, release done.

Btw - I've found 13.0.0 files here: https://exomiser.monarchinitiative.org/exomiser/download - maybe your https://github.com/lgmgeo/AnnotSV/blob/master/share/AnnotSV/jar/exomiser-rest-prioritiser-12.1.0.jar needs update too?

Thanks for this report, I will look at it for a next release.

Stikus commented 2 years ago

Thanks for fast answer and releases!

Stikus commented 1 month ago

@lgmgeo Any news/need for exomiser-rest-prioritiser.jar update?

It is already 14.0.0 version: https://data.monarchinitiative.org/exomiser/latest/exomiser-cli-14.0.0-distribution.zip

Looks like https://github.com/lgmgeo/AnnotSV/blob/master/share/AnnotSV/jar/exomiser-rest-prioritiser-12.1.0.jar is still working, but maybe it needs update.

FYI: Exomiser database file name and size changed: 2202_phenotype.h2.db (9.5 GB) -> 2402_phenotype.mv.db (3GB).

lgmgeo commented 3 weeks ago

Sorry, nothing planned soon.

Since 2019, with the help of Jules JACOBSEN (Exomiser developer), AnnotSV hacks the exomiser-rest-prioritiser.jar file by simply including the 1902_hg19.tar.gz from the complete distribution. Actually, it is not possible to update this file by myself.