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lh3 / bfc

High-performance error correction for Illumina resequencing data
MIT License
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bfc with MiSeq data? #10

Closed peterdfields closed 9 years ago

peterdfields commented 9 years ago

Is it possible to use bfc with MiSeq data with read lengths on the order of 250 to 300bp?

lh3 commented 9 years ago

It should be fine, but I haven't tried that by myself.

peterdfields commented 9 years ago

Okay, great! So far when I try to run the reads through I'm getting a very generic error message of:

* Error in `bfc': malloc(): memory corruption: 0x00007f7b3c000089 *

The same error does not arise when using bfc for standard standard HiSeq reads with lengths between 100 and 150. I can send a sample set of reads if that would be useful.