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lh3 / bfc

High-performance error correction for Illumina resequencing data
MIT License
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BFC-ht versus BFC-bf #2

Closed macmanes closed 9 years ago

macmanes commented 9 years ago

The arXiv preprint reports that the ht mode of BFC is generally more accurate than the bf mode.. Does the code in the readme e.g., bfc -s 3g -t16 reads.fq.gz | gzip -1 > corrected.fq.gz specify the ht or bf mode?

lh3 commented 9 years ago

The "master" branch is for BFC-ht (or BFC in brief). BFC-bf is on the kmc branch.