lh3 / bgt

Flexible genotype query among 30,000+ samples whole-genome
MIT License
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FMF query #15

Open zmaroti opened 3 years ago

zmaroti commented 3 years ago

Just opening the bgt-server without queries we get INFO on config parameters and the queryable sample/variant annotations from the FMF files: XXX.bgt.spl for samples, and from the annot.XXX.fmf.gz that was provided by the -d option).

However there is no function to see what are the range in INT, or FLOAT fields or what are the queryable values in case of STRING fields.

Technically we usually know it or could document it based on our databses, however It would be nice to have some function to query these on the fly using the bgt fmf command (and/or with some new flags in the bgt-server). This would allow that users who have no access to the server could explore their options.

Regards, Zoltan