lh3 / bgt

Flexible genotype query among 30,000+ samples whole-genome
MIT License
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Compatibility with GLNexus joint called VCFs #17

Open biojiangke opened 8 months ago

biojiangke commented 8 months ago

It seems that BGT does not work with joint called variants by DeepVariant/GLNexus process, when run import, it gives this error:

[W::vcf_parse1] FORMAT 'RNC' is not defined in the header

I understand that this is probably caused by the new "RNC" field by GLNexus, but is there any possible walk-around solutions?