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lh3 / bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
GNU General Public License v3.0
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bwa-postalt.js Allocation error - process out of memory #220

Closed jbird361 closed 6 years ago

jbird361 commented 6 years ago

Hi

In attempting to perform post-alignment processing using bwa-postalt.js, I run into an error:

Fatal error in CALL_AND_RETRY_2 Allocation failed - process out of memory

I'm performing this on a relatively small sam file (Approx 4GB), with plenty of ram to spare. I am unsure how to increase the amount of allocated ram if that is the case.