Average Coverage Calculator for bwakit hg38

lh3 / bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

GNU General Public License v3.0

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Average Coverage Calculator for bwakit hg38 #287

Open DarioS opened 4 years ago

DarioS commented 4 years ago

I haven't seen any software that calculates average WGS coverage correctly when there are alternate contigs and decoys in the reference set (e.g. hs38DH). Perhaps bwakit should provide such a utility.