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lh3 / bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
GNU General Public License v3.0
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Output mapping quality with XB #293

Closed nh13 closed 2 years ago

nh13 commented 4 years ago

Related to https://github.com/lh3/bwa/pull/292 (i.e. the doc for #292 would need to update this).

I would like to know the mapping quality for alternate hits.