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lh3 / bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
GNU General Public License v3.0
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Cannot allocate memory #430

Open emilyhokning opened 3 months ago

emilyhokning commented 3 months ago

Pls help! not sure why cannot allocate memory only for some of the fastq files, should I split my fastq file (it is only 3.66 GB): my command:

bwa aln -t 12 Homo_sapiens.GRCh38.dna.toplevel.fa.gz trimSRR6701645.fastq > SRR6701645_H3K27me3WT.sai bwa samse Homo_sapiens.GRCh38.dna.toplevel.fa.gz SRR6701645_H3K27me3WT.sai trimSRR6701645.fastq > SRR6701645_H3K27me3WT.sam

Failed to allocate 18446744025547218160 bytes at bwase.c line 66: Cannot allocate memory