lh3 bwa issues - Githubissues

lh3 / bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

GNU General Public License v3.0

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issues

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fixed typo

#286 bounlu opened 4 years ago
0
Malformed SAM when using bwa sampe

#285 Prunoideae opened 4 years ago
0
illumina DNA seq reads on CDS sequences

#284 psur9757 opened 4 years ago
0
travis: added arm64, ppc64le and s390x tests with simde

#283 junaruga opened 4 years ago
6
Wrong Supplementary Alignments

#282 DarioS closed 4 years ago
11
bwa index compatibility

#281 EricDeveaud closed 4 years ago
1
Deletion at the end of the alignment

#280 tprodanov opened 4 years ago
1
performance increase in alignment

#279 andreasbuhr opened 4 years ago
6
set optimization from -O2 to -O3, 3.4 % performance increase observed

#278 andreasbuhr opened 4 years ago
1
Mapping mate-pair files with BWA

#277 osowiecki opened 4 years ago
0
bwa mem "killed" in docker container

#276 pwanj closed 4 years ago
3
make is failed on gcc 10

#275 junaruga closed 4 years ago
5
-Y -M should use or not?

#274 tamadezhenshiyuncai opened 4 years ago
0
Unexpected peak in insert size histogram

#273 chassenr closed 4 years ago
6
BWA MEM ! Why Different threads cause Slightly different bam file?

#272 baimianer closed 4 years ago
2
[E::main_mem] unknown read type

#271 emmannaemeka opened 4 years ago
0
BWA mem parameters

#270 denise0593 opened 4 years ago
0
Alignment bwa and human_g1k_v37.fasta genome, fail to locate the index files

#269 AsanchezMD opened 4 years ago
1
BWA Kit uses an outdated version of BWA

#268 rhpvorderman opened 4 years ago
0
GCC 10 and Makefile fixes

#267 SoapGentoo closed 4 years ago
8
BWA mem paired reads uses file size to check equal length

#266 Nheyer opened 4 years ago
1
location of unit and system tests

#265 pieterlukasse opened 4 years ago
0
Windows Subsystem for Linux (WSL) FAQ

#264 karolzlot opened 4 years ago
0
Makefile: Use $CPPFLAGS and $LDFLAGS if they are set

#263 jmarshall closed 2 years ago
2
Some questions about multithreads in bwa?

#262 AntetokounmJie closed 4 years ago
2
BWA stuck on this sequence?

#261 harveyche opened 4 years ago
3
bwa mem uses more threads than requested

#260 wbsimey closed 5 years ago
3
Update bwape.c to allow equal reads in pair to be mapped as mapped in proper pair

#259 schultzdre opened 5 years ago
0
assertion in bntseq fails

#258 AliSajid opened 5 years ago
0
bwakit/run-gen-ref not checking NCBI checksums

#257 coreymhudson opened 5 years ago
0
BWA-MEM doesn't return all matches (very short sequences)

#256 Permafacture closed 5 years ago
7
identity rate in bwa

#255 ucassee opened 5 years ago
0
bug? CIGAR covers x bases but the sequence is 0 read bases

#254 ghost opened 5 years ago
0
Feature requests: read input as bam

#253 grenaud opened 5 years ago
0
the minimum mapped length

#252 zhouyunyan opened 5 years ago
0
Maximum number of bases for a reference genome

#251 xie186 opened 5 years ago
3
BWA-0.7.17 memory possibly overflows

#250 lidd77 opened 5 years ago
1
Add support for GPU based scaling

#249 oferchen closed 5 years ago
1
run-gen-ref generates alt file for hs38a but not for hs37d5

#248 jessrosenfield closed 5 years ago
5
Update Makefile to work with Bioconda

#247 andersgs closed 4 years ago
2
I want to know how to control the matching rate.

#246 mireiya closed 5 years ago
1
Is any new release planned?

#245 sndrtj opened 5 years ago
2
fail to locate the index

#244 wbsimey opened 5 years ago
0
Fix potential assertion in bntseq fails #120

#243 yanlinlin82 opened 5 years ago
1
bwa mapping question

#242 aleuUH opened 5 years ago
1
No alternative alignment reported for two identical soft clipped alignment

#241 wangwl closed 5 years ago
0
Segmentation fault

#240 ucassee opened 5 years ago
0
[bwa_index] Pack FASTA... *** buffer overflow detected ***

#239 H4niz opened 5 years ago
4
Is it possible to specify the temporary / scratch directory for BWA mem?

#238 illusional closed 5 years ago
1
Any options for genome reference of high error rate?

#237 zhangrengang opened 5 years ago
0

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