After running dipcall, it will generate a file named ${pre}.dip.vcf.gz. All the genetic variants including SNVs, Indels, and SVs are all deposited in this VCF file. I know i can separate these variants according the length of the reference allele and alternative allele. However, i do not know to extract the inversions from this VCF file?
lh3
commented
1 year ago
Dear @lh3 ,
After running
dipcall, it will generate a file named${pre}.dip.vcf.gz. All the genetic variants including SNVs, Indels, and SVs are all deposited in this VCF file. I know i can separate these variants according the length of the reference allele and alternative allele. However, i do not know to extract the inversions from this VCF file?Looking forward to your reply, thanks.
Sincerely yours, Zheng zhuqing