Closed nirvana693 closed 1 year ago
Dear @lh3, Thank you for great tools.
I have phased human genome (using trio data) assembly generated from hifiasm. I have generated dipcall results by aligning hap1 and hap2 assemblies to CHM13 genome. Below are the results of filter column-
5134326 . 5318 DIPY 144669 GAP1 548 GAP1;DIPY 14048 GAP1;HET2 159554 GAP2 48065 HET1 87672 HET1;GAP2 17434 HET1;HET2 34374 HET2
May I know how to interpret these results in terms of assembly quality?
see vcf header
lh3
commented
1 year ago
Dear @lh3, Thank you for great tools.
I have phased human genome (using trio data) assembly generated from hifiasm. I have generated dipcall results by aligning hap1 and hap2 assemblies to CHM13 genome. Below are the results of filter column-
May I know how to interpret these results in terms of assembly quality?