Open daggoo opened 5 months ago
Hi, I have two calls at pos1 and pos2. The last columns are the following
pos1: . . GT:AD 1|0:1,1 pos2: . . GT:AD 1|0:1,1
The VAF of the call at pos1 from the read-based variant calling is 0.9; at pos2 -- 0.4.
Could you explain how to read the last column? I saw the header but was confused about why they had the same genotype but different zygosity.
Hi, I have two calls at pos1 and pos2. The last columns are the following
pos1: . . GT:AD 1|0:1,1 pos2: . . GT:AD 1|0:1,1
The VAF of the call at pos1 from the read-based variant calling is 0.9; at pos2 -- 0.4.
Could you explain how to read the last column? I saw the header but was confused about why they had the same genotype but different zygosity.