Can this software be used to identify the SV of Maize？

lh3 / dipcall

Reference-based variant calling pipeline for a pair of phased haplotype assemblies

MIT License

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Can this software be used to identify the SV of Maize？ #5

Closed z1242099843 closed 3 years ago

z1242099843 commented 3 years ago

Hello，I want to use dipcall to identify the variation of Maize. I only have a refrence fasta and a assemblies fasta which used to identify the variation. I don't have pat.fa and mat.fa, how shoud I do to got them?

lh3 commented 3 years ago

Use the same file for both paternal and maternal.