Is there any parameter or easy code changes that could make fermi-lite strand specific ? I am happy to make the changes if you think this is straightforward and had some pointers, I tried removing some of the revcomp lines in the source code but the resulting assembly was worse off.
In my use-case I know all my input sequences are from the same strand therefore I do not want their reverse complement to be tried for overlaps.
Is there any parameter or easy code changes that could make fermi-lite strand specific ? I am happy to make the changes if you think this is straightforward and had some pointers, I tried removing some of the revcomp lines in the source code but the resulting assembly was worse off.
In my use-case I know all my input sequences are from the same strand therefore I do not want their reverse complement to be tried for overlaps.
Thank you