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lh3 / fermi

A WGS de novo assembler based on the FMD-index for large genomes
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SRA Toolkit commands in the README #14

Open evanbiederstedt opened 6 years ago

evanbiederstedt commented 6 years ago

Hi Heng Li

It might be good to update the README with respect to downloading C. elegans

The following doesn't work:

$ fastq-dump --split-spot SRR065390.lite.sra
fastq-dump.2.8.1 err: item not found while constructing within virtual database module - the path 'SRR065390.lite.sra' cannot be opened as database or table

The following does work:

$  fastq-dump --split-spot SRR065390

Thanks!