Open yunfeiguo opened 9 years ago
Dear Dr. Li,
I ran fermi with commands shown in documentation but failed at the 'fermi clean' step with no log info and no output. What are the possible reasons and how to troubleshoot? Thank you!
run-fermi.pl -ct12 -e ~/Downloads/fermi/fermi *.fastq.gz > ilmn_fermi_asbl.mak make -f ilmn_fermi_asbl.mak -j 12 > ilmn_fermi_asbl.log 2>&1
$ du -h * #file size of all output files 44G fmdef.ec.fmd 12K fmdef.ec.fmd.log 134G fmdef.ec.fq.gz 188K fmdef.ec.fq.gz.log 20G fmdef.ec.rank 4.0K fmdef.ec.rank.log 4.0K fmdef.fltuniq.log 531G fmdef.p0.mag.gz 4.0K fmdef.p0.mag.gz.log 0 fmdef.p1.mag.gz 0 fmdef.p1.mag.gz.log 4.0K fmdef.p2.mag.gz 4.0K fmdef.p2.mag.gz.log 4.0K fmdef.p3.mag.gz 4.0K fmdef.p3.mag.gz.log 4.0K fmdef.p4.fa.gz 4.0K fmdef.p4.fa.gz.log 4.0K fmdef.p5.fq.gz 4.0K fmdef.p5.fq.gz.log 68G fmdef.raw.fmd 12K fmdef.raw.fmd.log 4.0K ilmn_fermi_asbl.log 8.0K ilmn_fermi_asbl.mak
Dear Dr. Li,
I ran fermi with commands shown in documentation but failed at the 'fermi clean' step with no log info and no output. What are the possible reasons and how to troubleshoot? Thank you!