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lh3 / gfatools

Tools for manipulating sequence graphs in the GFA and rGFA formats
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Format clarification #12

Closed fbemm closed 4 years ago

fbemm commented 4 years ago

Dear Heng,

I just have a simple questions regarding the gfa2bed format (when run with -s)

Test-2  0       227208972       *       *       *       *       *       *
Test-1       769027  769267  <       Test-2  7108396 <       Test-2  7108066

The example tells me that Test-1 (from 769027 769267) is inserted/replacing Test-2 at 7108396 to 7108066.

Am I getting this right?

Thanks!

lh3 commented 4 years ago

Yes, in the reverse orientation, indicated by <.

fbemm commented 4 years ago

Thanks!