Lost segment sequences while producing unitigs

lh3 / gfatools

Tools for manipulating sequence graphs in the GFA and rGFA formats

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Lost segment sequences while producing unitigs #9

Open snurk opened 4 years ago

snurk commented 4 years ago

While my original gfa file has sequences in it, but asm -u command results in a gfa having * for all the segments. Is there an option to produce the unitig graph with sequences?

lh3 commented 4 years ago

gfatools doesn't have this feature so far, unfortunately.