lh3 / hickit

TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
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How to Call Tads #36

Closed licx11 closed 1 year ago

licx11 commented 1 year ago

@tanlongzhi Hi, I tried to call tads from scHi-C data, but I don't know which data format to use, .pairs or .hic or any others? And I'm not sure how to use the parameter -T. The following is my code and error message:

(base) [lichx@localhost hickit-0.1.1_x64-linux]$ ./hickit -T /data_disk/lichx/cortex-visual-dark-p028-b6_192.contacts.pairs hickit: main.c:141: main: Assertion `m && m->pairs' failed. Aborted (core dumped)

Thanks for your help!