What are the usage parameter of miniasm for aligning a reference.fasta and a PAF file?

lh3 / miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

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What are the usage parameter of miniasm for aligning a reference.fasta and a PAF file? #17

Closed MKGAURAB closed 8 years ago

MKGAURAB commented 8 years ago

miniasm/miniasm -f reads.fq reads.paf.gz > reads.gfa here reads.fq is a read file. But I use a reference file in stead of read file what parameters would miniasm need?

lh3 commented 8 years ago

Miniasm does de novo assembly only. It does not work with reference-guided assembly.