I'm testing miniasm using mhap overlaps generated with canu. I converted canu internal read IDs back to the original ones, and miniasm doesn't complain about any potential issues. It actually writes the unitigs as expected (different lengths,etc), but they are all filled with Ns.
Ps: I didn't have any problem with the first trial using minimap/miniasm approach.
Hello @lh3,
I'm testing miniasm using mhap overlaps generated with canu. I converted canu internal read IDs back to the original ones, and miniasm doesn't complain about any potential issues. It actually writes the unitigs as expected (different lengths,etc), but they are all filled with Ns.
Ps: I didn't have any problem with the first trial using minimap/miniasm approach.
Any help? Thanks, Pedro