search

lh3 / miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)
MIT License
303 stars 69 forks source link

multithreaded #31

Closed jdmontenegro closed 6 years ago

jdmontenegro commented 6 years ago

Hi,

I am looking for the multithread flag in the manual, but cannot find one. Should I assume that miniasm is still single-threaded? Or does it use all the threads available in the node?

Cheers

lh3 commented 6 years ago

Miniasm is much faster than overlapping but much more difficult to implement multithreading. It is not worth the effort to do multithreading.