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lh3 / miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)
MIT License
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Unitig id suffix 'l' vs 'c' #41

Open audrina opened 6 years ago

audrina commented 6 years ago

Hello Heng,

I ran miniasm on some sets of reads of different lengths and found that in some cases the same unitig would have an 'l' suffix in one file and a 'c' suffix in another. For example, utg000028c in assemblyA.gfa and utg000028l in assemblyB.gfa. I was just wondering what these identifiers stand for.

Thanks in advance! Audrina

lh3 commented 6 years ago

c means circular. l means linear.