search

lh3 / miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)
MIT License
296 stars 68 forks source link

Working with corrected Nanopore reads? #49

Closed moold closed 5 years ago

moold commented 6 years ago

Hi, Could you suggest some preset options of minimap2 for corrected Nanopore reads (about 1-3% error rate ) to do assembly?

Thanks.

lh3 commented 6 years ago

You can still use -x map-ont and filter on the dv tag.