Hi @lh3 , manual of miniasm for assembling is limited to assembling for single file of pacbio or nanopore. Due to the code like that "self-mapping: minimap2/minimap2 -x ava-pb -t8 pb-reads.fq pb-reads.fq; assembly: miniasm/miniasm -f reads.fq reads.paf.gz ", putting multiple fastq files into the code seems to be incompatible and unreliable. Should I merge multiple fastq files into one single-file or assmble respectively for each file in multiple fasta files?
Hi @lh3 , manual of miniasm for assembling is limited to assembling for single file of pacbio or nanopore. Due to the code like that "self-mapping: minimap2/minimap2 -x ava-pb -t8 pb-reads.fq pb-reads.fq; assembly: miniasm/miniasm -f reads.fq reads.paf.gz ", putting multiple fastq files into the code seems to be incompatible and unreliable. Should I merge multiple fastq files into one single-file or assmble respectively for each file in multiple fasta files?