Open GeoMicroSoares opened 5 years ago
Did you get the answer? I got the same problem.
I have the same issue, have you had any insight at what caused it and how to solve it ? Thanks !
Hi again, I still don't know what caused the issue, but I designed a workaround if anyone is interested: github.com/RolandFaure/reconstitute_miniasm_contigs It is a simple python script that reconstitutes the sequence from the 'a' lines of the GFA
Hi there,
Running miniasm with seemingly good contigs and mappings (below), I'm getting unitigs where all bases are N's. How can this be improved? Thanks!
Example output
.gfa
:Example input
.fasta
:Example input
.paf.gz
: