how to calculated identity?

lh3 / miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

MIT License

297 stars 68 forks source link

how to calculated identity? #69

Closed LinXialab closed 5 years ago

LinXialab commented 5 years ago

Hi,

Recently, we are comparing minimap2 and NGMLR. Could you please tell us how does the number followed "dv:f:" generate? For NGMLR, Fritz suggested us calculated the identity as follow: identity = (the number of sequence matches)/(the total number of sequence matches, mismatches, insertions and deletions in the alignment).

Looking forward your reply! Lin

lh3 commented 5 years ago

Please create an issue at the minimap2 repo.