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lh3 / miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)
MIT License
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Segmentation fault (core dumped) while running miniasm #73

Open ShuChen1986 opened 4 years ago

ShuChen1986 commented 4 years ago

Hi, I used minimap2 get a paf file, and then I used miniasm to get the gfa file. It gave me the following error info. Could you give me any suggestions on this?

minimap2 -t 28 -x ava-ont N_all_filt.fq N_all_filt.fq | gzip -1 > ont.paf.gz
miniasm -f ~/scsio/Nanopore/Data/N_all_filt.fq ont.paf.gz > ont.gfa
[M::main] ===> Step 1: reading read mappings <===
/opt/gridview//pbs/dispatcher/mom_priv/jobs/76753.mgr.SC: line 12: 24731 Segmentation fault      (core dumped) ~/app/miniasm-master/miniasm -f ~/scsio/Nanopore/Data/N_all_filt.fq ont.paf.gz > ont.gfa
ardy20 commented 3 years ago

I get the same error. Looks that no one takes care of this tool anymore.