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lh3 / miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)
MIT License
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output string graph in GFA format #8

Closed ekg closed 8 years ago

ekg commented 8 years ago

Would it be straightforward to output the string graph obtained in step 3 of the algorithm in GFA format?

lh3 commented 8 years ago

Option -p sg. There is also a hidden option -S to control how many graph cleaning steps to apply. See main.c for possible values.

ekg commented 8 years ago

Great! Thanks @lh3