sequence to graph mapping didn't work neither

lh3 / minigraph

Sequence-to-graph mapper and graph generator

https://lh3.github.io/minigraph

MIT License

396 stars 38 forks source link

Open lingliao opened 1 year ago

lingliao commented 1 year ago

I go with the command, minigraph -cx lr graph.gfa query.fa > out.gaf

the graph.gfa is generated by the test data provided by authors, MT-chimp.fa and MT-human.fa.

then I use the generated graph to map with MT-chimp.fa, the output is empty...

I call minigraph with docker image "quay.io/comparative-genomics-toolkit/cactus:v2.2.3"

Let me know if there is any way to update or only me meet the problem.

Szhiha commented 7 months ago