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lh3 / minimap

This repo is DEPRECATED. Please use minimap2, the successor of minimap.
https://github.com/lh3/minimap2
MIT License
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error (core dumped) #13

Open guillaume-rs opened 7 years ago

guillaume-rs commented 7 years ago

Hi,

I use minimap to do an assembly with miniasm. When I launch the command : minimap -Sw5 -L100 -m0 reads.fa reads.fa | gzip -1 > reads.paf.gz

I get the following error : minimap: sketch.c:59: mm_sketch: Assertion `len > 0 && w > 0 && k > 0' failed. Abandon (core dumped)

Would you have any idea where it comes from? What could be wrong with my data?

Thanks,

Guillaume

mw55309 commented 6 years ago

You have a zero-length sequence in either your input fastq/a or assembly