I have some viral metagenomic bins that I've noticed have a large amount of overlap between each other. I was wondering if it was suitable to use minimap to merge these contigs together, and if so, how would i go about this since there's no reference sequence (just want to map all contigs in a multifasta to each other)
Hi there,
I have some viral metagenomic bins that I've noticed have a large amount of overlap between each other. I was wondering if it was suitable to use minimap to merge these contigs together, and if so, how would i go about this since there's no reference sequence (just want to map all contigs in a multifasta to each other)
Thanks for the help in advance!