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lh3 / minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences
https://lh3.github.io/minimap2
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All vs all mapping of contigs in a multifasta #620

Closed sxh1136 closed 4 years ago

sxh1136 commented 4 years ago

Hi there,

I have some viral metagenomic bins that I've noticed have a large amount of overlap between each other. I was wondering if it was suitable to use minimap to merge these contigs together, and if so, how would i go about this since there's no reference sequence (just want to map all contigs in a multifasta to each other)

Thanks for the help in advance!

tseemann commented 4 years ago

Maybe https://github.com/mahulchak/quickmerge