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lh3 / minipileup

Simple pileup-based variant caller
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non diploid organisms #12

Closed SamKalandarov closed 3 months ago

SamKalandarov commented 3 months ago

Good evening

I'm curious about whether I can utilize minipileup for haploid and hexaploid organisms ?

Thanks, Sam,

lh3 commented 3 months ago

Minipileup simply counts alleles. It doesn't assume ploidy. Although the GT field looks like diploid, you can ignore it.