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lh3 / miniprot

Align proteins to genomes with splicing and frameshift
https://lh3.github.io/miniprot/
MIT License
323 stars 17 forks source link

Use for prokaryotes? #19

Closed thibaudnis closed 1 year ago

thibaudnis commented 1 year ago

Have you tried miniprot against circular genomes (e.g. bacteria)? Would it be be able to produce cross-origin alignments? Thanks!

lh3 commented 1 year ago

Miniprot would give two hits, one on each side of the origin.