Use PSMC for a genome assembly constructed from genomic DNAs of multiple individuals

lh3 / psmc

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

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Use PSMC for a genome assembly constructed from genomic DNAs of multiple individuals #11

Closed kazuaki0816 closed 4 years ago

kazuaki0816 commented 4 years ago

Hi Developer

I have a genome assembly sequence. It was constructed from genomic DNAs obtained two separate individuals of the same species. Libraries of paired-end and mate-pair reads were created from the two genomic DNAs, and assembled by Platanus assembler.

Is it possible to estimate the population size of such the genome assembly using gDNAs from multiple individuals using PSMC?

lh3 commented 4 years ago

Is it possible to estimate the population size of such the genome assembly using gDNAs from multiple individuals using PSMC?

No.