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lh3 / psmc

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
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problem when plotting #33

Open gubrins opened 3 years ago

gubrins commented 3 years ago

Heys,

I get an error message when running this code: utils/psmc_plot.pl diploid diploid.psmc

Can't find PostScript prologue file prologue.ps loadpath is empty gnuplotrc is read from /anaconda/envs/_build/share/gnuplot/5.0 Please copy prologue.ps to one of the above directories or set the environmental variable GNUPLOT_PS_DIR or set the loadpath appropriately line 0: Plot failed!

Anybody has or had the same issue?

Thanks!

ekhowell commented 3 years ago

@gubrins I'm also getting this same error, were you able to find a fix?

gubrins commented 3 years ago

Heys @ekhowell, I'm afraid not. However, with my personal computer I'm able to plot it. The only help I can offer you is to plot your data if it is urgent. Let's see if somebody helps us both!

gubrins commented 3 years ago

I solve it just changing the computer, with the one I have at work I was not able to plot it... Did you manage to run the program performing bootstrap? I'm having issues with that @ekhowell

huixianxie commented 1 year ago

I also encountered this problem. This command needs gnuplot software, and the gunplot needs root permission to use. You can solve it by using root login and then executing commands.