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lh3 / psmc

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
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Error while running Plot #55

Open lpabonv opened 1 year ago

lpabonv commented 1 year ago

I have produced the combined.psmc file for input for the psmc_plot.py But I get the following error:

Can't exec "epstopdf" No such file or directory at /hpcfs/home/ciencias_biologicas/l.pabonv/.conda/envs/py-popgen/bin/psmc_plot.pl line 236, <> line 195839.

Any idea how ti fix this, I'm not sure how this object is set in the script, so I don know if there is any infomation missing.

vlnaraujo commented 12 months ago

I get the same issue. I hope you get an answer.

timurrxxcd commented 1 month ago

did you find answer?

Lavarchus commented 1 month ago

You'll need to reset your container so it can convert eps files to pdf

See https://github.com/lh3/psmc/issues/22

Hope this helps!